| ID | Coordinates* | Neighboring genes | Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16) |
Strongest annotations | Order |
|---|---|---|---|---|---|
| VT12409 | chr2R 1955128–1957242 (2114 bp) | CCHa2-R, CR44131 |
      active |
dorsal ectoderm anlage subset, procephalic ectoderm anlage, hindgut anlage | VDRC |
Annotations
| stage | annotation term | intensity |
|---|---|---|
| 4-6 | dorsal ectoderm AISN subset | 1 |
| 7-8 | A-P stripes | 1 |
| 7-8 | procephalic ectoderm anlage | 2 |
| 7-8 | dorsal ectoderm anlage subset | 3 |
| 9-10 | hindgut anlage | 2 |
| 11-12 | not active | 0 |
| 13-14 | not active | 0 |
| 15-16 | not active | 0 |
Neighboring genes
| gene ID | gene name | distance | links |
|---|---|---|---|
| FBgn0033058 | CCHa2-R | overlapping | BDGP FlyBase |
| FBgn0264980 | CR44131 | 1172bp upstream | BDGP FlyBase |
| FBgn0033059 | CG7845 | 6848bp upstream | BDGP FlyBase |
| FBgn0033056 | CG7856 | 8066bp downstream | BDGP FlyBase |
| FBgn0033060 | CG7849 | 9287bp upstream | BDGP FlyBase |
UCSC snapshot
Sequence
agcacggaaatgcccacggaggtggtgcgggcgggggatcctccggacttggagccggcgggcggacggcggcagtgagcgaaaagaggtgaggcacgcttattgtggagctgctaggggaggaggaggtggtggtatccttgcaggccgacgagcagctctgagcggaaacaattggcctgtgatctcactgtgtgcttgcaccactcgcatttcgaatctctcactctgcactccacacaatccccctggtactttccagcatggctggactatttggaaatcgcatccgcgacaggttcaataggttaaacaacgatttacctacatcactaagaatttgctcctactgctgttgtaactagataaaggttataaagggcaaacgatagcacatcacaaaactccatttcgctgtatatatatatgtatgtaccaagcaacttttgcacataaatacacattcaatgtaatgttatcgtgttgtatattatgtgttaattacgtaagtccccaagctcattaaatgtaactcgttattacctgcctcggtgcaataaaataatattataaaggctacagagctagaaacccatatagaaagcacatgcctagctcattttccaaatataaattgcatatatcaatagtctaagcggatttcagaataagattaatgtaaataaatggattccataaatgtaaaaagcttgtaaattttgctggatattctgcgtttttatagccgaagactttttggtttgtggagcgtacggaaaaaggtatggtcatgtacctatgtacatacagcaattaatgtaccatctgcttagttattttttaaacaatattttggaaattataaatttcttttgttttttcagctttataaatcgttacgaaagtggcgtaatgcgctactaaataaatggaggtaccgaaacaccagaaaacggtaacccataacaaatcgtacaaagcctacggatgagttcgattcaatattgatattaaaagtgtaaattgaatttataaataaatcaacattttatgtattgaagacttatctatctttgttcattacctttgaggaatttaaaaactgcgtgcattttgaaaacttatgcgagaatgatttttctaatttgtgaaatcgtatgctaccgcaatgcccctacaaagcttatagcaaccttagtttgtttcgttattccaatttatttgggaattcggccgtaccgaaccaaaccacccttatcatggctaaatcgccaaattgctttgaagttttggcccattgaaacaactacaaatgcacaagctcccttagcaccacccagttccacccactctttcacactaccaaagcaatttgtgtatttggacaaaggaaatcgtcaggacgagcccagaaaagacaataaatacaatctggccccaagcacacgcaaaatttcattatggcatgccaatcaggaggtcacaggccacagccgccggagttggtgtatgtaaattggccaaacacggcatgtattaccagaggacatcccgccctcacaatcgcaggatgtccctacaaatgtcgagtccacagttattgacatccaataagtgggatctcaaaatgccctcgtgcacaaaaaaaaaggatgctgtccatccgctggccaagcagccgatcgacctatcgccccctctaaatcacaactgaagggagcatcagaaaattccggcccagtaccgacgtcgcaaaatttccgaactgcgggaccaagcaaatggggcattattcggtcctgcactgtgggggtcaaagggcatttgatttatgccaacgtaactgagttcaccgcagcctgctgccgtcaaaggtaaatgcgactaccaacggcgattgccgcaaatgcggcgttgattcgcaaggcaactaggctccgatttggaacagcgatggcgatgtccatcgcacaattagctaatttcactctacccgccgtccagcaaatgagtctgtcctttttgggttgatcaggatgccaatggtaagggtcggttgagttgagagtttacgaccatcgaaagacagcaagccattaaggtagttgtggcacg
PCR verification status
Line verified as correct.