| ID | Coordinates* | Neighboring genes | Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16) |
Strongest annotations | Order |
|---|---|---|---|---|---|
| VT19344 | chr2R 15506511–15508708 (2197 bp) | sm, CR44474 |
      active |
epipharynx, salivary gland, hypopharynx | VDRC |
Annotations
| stage | annotation term | intensity |
|---|---|---|
| 4-6 | not active | 0 |
| 7-8 | not active | 0 |
| 9-10 | not active | 0 |
| 11-12 | posterior spiracle specific anlage | 2 |
| 11-12 | hypopharynx primordium | 2 |
| 11-12 | clypeo-labral primordium | 2 |
| 11-12 | salivary gland primordium | 3 |
| 13-14 | antenno-maxillary-labial complex | 3 |
| 13-14 | epipharynx | 4 |
| 13-14 | midgut broad | 2 |
| 13-14 | hindgut | 1 |
| 13-14 | salivary gland | 4 |
| 13-14 | posterior spiracle | 3 |
| 13-14 | hypopharynx | 4 |
| 13-14 | clypeolabrum | 4 |
| 15-16 | antenno-maxillary-labial complex | 3 |
| 15-16 | head subset | 3 |
| 15-16 | midgut broad | 2 |
| 15-16 | proventriculus | 3 |
| 15-16 | salivary gland | 3 |
| 15-16 | posterior spiracle | 2 |
| 15-16 | atrium | 3 |
Neighboring genes
| gene ID | gene name | distance | links |
|---|---|---|---|
| FBgn0003435 | sm | overlapping | BDGP FlyBase |
| FBgn0265667 | CR44474 | 13712bp downstream | BDGP FlyBase |
| FBgn0265696 | CR44503 | 14189bp upstream | BDGP FlyBase |
| FBgn0265666 | CR44473 | 15112bp downstream | BDGP FlyBase |
| FBgn0261807 | CG42753 | 16273bp upstream | BDGP FlyBase |
UCSC snapshot
Sequence
cattgagacgcccccaattcgttgacaggcgcgcgttcgcctctattttttatttcagttttgtctttcacttttccgctggccaataaaataaattcaaatgagacaagttctgcggccccgaagtgcataaatattctttgtccccctggcagcaaattgtcagcttgttattgttatcattctactaaattattaaacaaaataattcgttgacattggcgtttttcgtgtttatgctactgaaagccatttatttctgcttagtctttatcattatttgtaattataatcaataggttttaattaattttatgtttgctttttgcgaaacgaaaccacaagtgttgtttacaatttaaattgggaaaggcaaaatgagatgaaatggcttaattacattaaccaggctaaggtttcagtttaaactcaattatatgcattcagtttcctagaattcaatagtaaataaagtagattttcctttcgacattacatgtatctaaatcaacattattttgttttttttttctgtatctgatgtcgatacacattctcggctgttgaaacttcatttcctgcccaaattgcagttaaaatttcagctgttcggactgcaatcattagcgcttctctctctcttttcagtccgcctcgaattgtatccatcggatacaattgtctaccaactctaacggcggccgcaaagcgagcattgaaatactgaaaaactgaaaaacaaaacccagcccagcccagaaaagtgaaccaaaaaaaaaagttacagagaaagagggccagagagcaggccacacgtcacttgacgttcaagttcaataacctggccaacacacagttatgccgcacacacaccacgacaattaccaaataatgtggccacatccacatgcacatgaaccaaaaacgccggcagtggcggcagcagctcaaaaaaaagaaccgaaatgaaataaaaactgaaactgagtaaagaaataccgaaaagtacgaaaaaaaaatgaaattgaaacaaaatatgcgttgaggcctgcttacataacagcaaataatgtttaagcagcggtaaagtaaagcaaagccaacccgaaaaagcgagaaatcgggaagaagtaagcacaaataatgacaaacaataacaaaaaaaaaaaaaacaatcatttccaaaaaagagcaaaacgaattacactcaaaaaggggcaaagccaaagttccaaaaaaagcgaaaaataaaacaaaaccgaaaagtgtacttcgattgaggcgaacgcagatacagatacagatacaatcgtacagatacagctggttcgcctgcatataaagatacatatccagctactcttccgcctgttgttgttattattttctttgcaccacacatctcttttttttttgtgctttttgtttgcatttaaaagttgtgaaatgctcgggcgtaagtggatttcgtagtgattatagggtcaaaaaataaaagggagcgggccaaatagatgctaaacaccagcaaatggcttaataacagtctgtatgacgtgcacatatttaaatcaattagttagatcgttaaatgcaagccaagtgaaaaatatatctgtgcataaaaacggcactgaaggagatacaggcaaaaaagatgagtatcacaatatgtttatgtttaatttagagctccaattctatgtttgatctaatttaaatgtaattccaagtataaaaaaggtatatttgctttaattcgtacaactttttagtagaaaatgcaaatatgcaaaattttataaaataaaagcaagtgtttaactttcttcagctggaaaaattcaaaatatggaaaaaactttccctttattctatttgtttacattaagaatgatttcggattacttgcccgtggtaatatgaaagttgagataatattctatgcaactctgacaaactatatttttctgtaagtgacttttattaagacaaactttgaggctttcaacattttgagtgcatactaaaattgaggtaaaaccataaagtcataaacaattatccattgcatatgctgcagatggcatgaaatttcattactcagcggttagaacaaaaaaaaaaacttttaaacctaaggaagcggcaaaaatcataattaaaaatttcgacagcaaatcaaattgccaagctca
PCR verification status
Line verified as correct.