Fly Enhancers @ Stark Lab

ID Coordinates* Neighboring genes Expression
(4–6, 7–8, 9–10, 11–12, 13–14, 15–16)
Strongest annotations Order
VT1967 chr2L 3820069–3822166 (2097 bp) CR44077, CR44076 activityactivityactivityactivityactivityactivity
active
ventral ectoderm anlage, lateral epidermis anlage broad, ventral epidermis anlage broad VDRC

Annotations

stageannotation termintensity
4-6head mesoderm AISN3
7-8ventral ectoderm anlage4
9-10head subset3
9-10lateral epidermis anlage broad4
9-10ventral epidermis anlage broad4
11-12head subset3
11-12ventral epidermis primordium subset3
13-14not active0
15-16not active0

Whole-slide images

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Neighboring genes

gene IDgene namedistancelinks
FBgn0264886CR440771536bp downstream BDGP FlyBase
FBgn0264885CR440764122bp downstream BDGP FlyBase
FBgn0003430slp15606bp upstream BDGP FlyBase iFly
FBgn0031573CG34076660bp downstream BDGP FlyBase
FBgn0021800Reph9399bp downstream BDGP FlyBase

UCSC snapshot

UCSC snapshot

Sequence

atcgtaggggttggggcggtactaacgattcctcaaacattctgcacgcgctgcgatcatttgtggtgattatatattgtttgaatttctcctttgattgcgtccacagtccacagtccgcaggatcgaggatcaaggatcgccgaggcataaatcaaggactcccgctgcggtgcattcccaatcgagggtatattttccaaaaggcgtggcccaaagtcggtcgaacagaattaaagtcaaagccaaaggccgaaaataagaaataattgagacatttgttggcagcagcggcggcggctgtttctttttggtatatttttggtctacccgcaatgacaatgtgataaaatgtacctaaaacaatgacatcaaagtcggtttccgaatttcttttatttcgtccatgggcggcagctccttgcatttttcaggtgacatcttatttccacctttcggcacgtttcgaacaatgagtgtccttttttgtcgtggtacgctactcccgctcatcaaaggatatatgcggccactctgatctctgccgatctcgccttgattatgttgtcacacaagaatcacaagattagacgaaaatcacggcgacgatgataaggcgatatagatcaaaggatcatcgagatcggctccttttggctactttatgtggattatgttgtcacatttggcacaatcggttcaatgcgttttcgtggaacttgctatgcgcaaaaggatattgtaatcgatatgggaagatcagtgccgagatcagcgggataatattttattatcgtgaaggtgagaaattcctcaaaggtgtcaaccaaactgtgaataaacaatggaattggatcatacaaaactgtataagctggtaatgaggtcctaaaataggtctacagatttatacttgatcgaagaagagtgaagggagctagctgggagattgatctacgaattcgtaaaagaagtagatacaagatacatataattgaaaagcatttattcattgggagcaatattatgtggattataaaataaatataatttaaatttaatataaagatattctttacatatatttgctaaaatcaatttccccaaaatccattgatcgccttgtacagtcatccccagatcctgacaacctaatccaagcggaggacagactgcgaattgaaatccgacgtggacatggtgcagctactaacgagcaattatcgccagctcccaggcgttgtttcccgatttcacacgcccagaaagggagagatatggtgaaggtatggagggtctaaaccctgagatatcctctatagggcatcctcatcacgcatttgctacgctttgggggggagtcccattggtgtggaaacctgcaaaggatagcactcggatactgatgtatcatgtgtggtggtgtataccatggcatctagcgcacacacacagcctagcatcgtatgctagttgttaggacacaatggatgaaaatattttcgtcctgttgtcaaatgattgcatttaatgtatcgaaatctgcgtgacgaatcaattcggttctggctgctgcaagctgcaatgggaaagaatgaagacaaatggtggatggcaaccagttgccctttataattcgatcaactctagccgacgagatccttccaggtttttatgcatcctgtctggcaatcccgatgccaaccgcatggacaacttaatcaataagtcgcagtcgcgcccgaaggatgcgaaatattttttttttatgtgcctcggtgtggaactgatcaattatagtgggtgttgactgtacgcttggagatcctttcggctcgttaggctataaagttgtcaaaggcggttgcttacgatctccagctgcttccatatgggggaggcgactctacttaagtggaactttgacacacatatggttaggaaataaaataaaatttagatgcctttgaagaggagaacattggaggtggtggctcttgagagcggggatcttaatcgctggaaatattagttctgacaagcatatttatgtttgaagtctttcaggggaaacgctttcgagatgctcattcaatgt

PCR verification status

Line verified as correct.

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