Fly Enhancers @ Stark Lab

ID	Coordinates*	Neighboring genes	Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16)	Strongest annotations	Order
VT29489	chr3L 12115145–12116051 (906 bp)	yps, CG11560	active	brain primordium broad, ventral nerve cord primordium broad, brain broad	VDRC

Annotations

stage	annotation term	intensity
4-6	not active	0
7-8	not active	0
9-10	ventral nerve cord anlage broad	1
11-12	brain primordium broad	2
11-12	ventral nerve cord primordium broad	2
13-14	brain broad	2
13-14	ventral nerve cord broad	1
15-16	brain broad	1
15-16	ventral nerve cord broad	1

Whole-slide images

All stages Quality: OK

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Neighboring genes

gene ID	gene name	distance	links
FBgn0022959	yps	overlapping	BDGP FlyBase iFly
FBgn0036249	CG11560	861bp downstream	BDGP FlyBase
FBgn0036248	ssp	2257bp downstream	BDGP FlyBase iFly
FBgn0036250	Ir68b	3442bp upstream	BDGP FlyBase
FBgn0011335	l(3)j2D3	3991bp downstream	BDGP FlyBase

UCSC snapshot

Sequence

cggctactgctgacgatgtttttgtttgtcggttgacgatttagatcctttcggatccttttctatgcagtgctctctgtggttgtattttgcagctcttgagcgccgttctaggaatttgaacatgggaaaacatggcgaggggggtagaaatcattaacgtaagtacaacttcaaaaataaatcgaagggatgaaagcaaaatgctggtttcggttgtaaattaagtgtgtgtgtgttgcttgttagccaattagtcacaggttaggtaactaaaaactaaatgtattagaatgttatgttagacccaaagcctccaagttaagtgtaaagtgttaaatgttagggtggtttctccgctttatcgctgtttctctgcttttggtgtcggtgcgtgtggctgctctggttgttagtggttatttacgaatgcatctacacaatgcactttagttagttgtttagtttttaagacgccttcaccatgttattattgtagaccttgttgttatgcttgcgactgactgttgctgatgtttactaatttagatgttgttatcgtaggtttgtttcggcgaagatgtttcagttgtttctgctgttgtgatgatgctggtgattagttcattaccttctctggctgctgctccgaaccaccgccagggccatttggtttcctctggcgacgtggacgtggctgttgtgggcgtggcggtccctggccttgaactgcaacagaataatattaataataatatataccaattatctaatagcacaaagttcactcactgtattctccgccgtcgcggcgtggtggcggtggaccattgttgaagttgcgtcggaagaagcgcctctggggtccgcccggtgggcctccaccgcgacgtggtccctgaccctc

PCR verification status

Line verified as correct.

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