| ID | Coordinates* | Neighboring genes | Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16) |
Strongest annotations | Order |
|---|---|---|---|---|---|
| VT30548 | chr3L 14145618–14147694 (2076 bp) | Sox21b, D |
      active |
A-P stripes, hindgut AISN, gap | VDRC |
Annotations
| stage | annotation term | intensity |
|---|---|---|
| 4-6 | A-P stripes | 4 |
| 4-6 | hindgut AISN | 4 |
| 4-6 | gap | 4 |
| 4-6 | head mesoderm AISN | 4 |
| 4-6 | trunk mesoderm AISN subset | 4 |
| 4-6 | pair rule | 4 |
| 7-8 | ventral ectoderm anlage | 2 |
| 7-8 | posterior endoderm anlage | 4 |
| 9-10 | brain anlage subset | 3 |
| 9-10 | ventral nerve cord anlage subset | 3 |
| 9-10 | hindgut anlage | 3 |
| 11-12 | brain primordium subset | 3 |
| 11-12 | ventral nerve cord primordium subset | 3 |
| 13-14 | ventral nerve cord subset | 2 |
| 13-14 | brain subset | 3 |
| 15-16 | ventral nerve cord subset | 2 |
| 15-16 | brain subset | 2 |
Whole-slide images
Neighboring genes
| gene ID | gene name | distance | links |
|---|---|---|---|
| FBgn0042630 | Sox21b | 21195bp downstream | BDGP FlyBase |
| FBgn0000411 | D | 23092bp upstream | BDGP FlyBase iFly |
| FBgn0036414 | nan | 33731bp upstream | BDGP FlyBase |
| FBgn0013718 | nuf | 38352bp upstream | BDGP FlyBase iFly |
| FBgn0036411 | Sox21a | 44401bp downstream | BDGP FlyBase |
UCSC snapshot
Sequence
tgtgtatcttctggcctgcatccgtgagtgcgtgtatctattccatgtgcaaatttgtttattggtaaatctgtgcagagatgcattgattgtctaccaaatgtcagattagatcagcgtggaacatgctctggaacatccggtcatccgctggagagttttgaagagtgagaagtggcagtggcattgttgcacgagtgtgagcctcgattgattgggtacagttatgcctgcttatcaatgcaccaaaagaatttgagttaggttatttaaaattagaattttatatttgatcctgttcttttgcatatcgcttgtaatccttcagtagttatctaagcgatacgattaattaataattacttaaaatacaaatgttttatacaaatattaatactgaaatgttatgttccataatttttctaagtgcaatctggctgtagttggggtagtcgctcaattaacccatggcaaatgctgtcataatgcgcacttagttgttgctccatatataaaaaataatgctttccaattcccattcgatatagaggaaatatcagggataataatgccgaggaatacaacaaataaagaacgcgaacaaagcaaaaaaaacaacgtaacgatgacgcgaactctgatgccctctctgtctaactgtgcatccctgtctcttttgctctgccgctgactgaataacacccagagaataatgaaaggcggcaacaataacgaaaaacaacaacaaaagttacacatatattgcgcaggatacacaaggatatacataatgtctggagtggccaggggagagtgggttgggggatttatgtttcaacattttcaattgtttcctaatgtttttgtattgcgtttttaccttttgtatccgggattgtctaatatgtcaggatattttattcatccgttttgttgtagtggggggaggtggggtggctttattgttcagagattacgcaatcaagtatcaaatatcggatacacttagccatctgtaggtcgaaacatacatcccaggagcccaaccttgatccccgccctcgcaaggatgtgtgaaatttccatggaattttcacagagcccgagaggcaagccaagaaatcagccagaagaagcgctaatcgttcgccttctcggaagttgggattgggttaatttcggaatttcctgcgttcaataaaacggtcgcactaataaggccaaacagccagaggaactggacgagtggaattagcattagtcagacaatggaatgggctaggcatttagcttttgtccctgcacacgcgaccttcccacccatccgaaaaaatggaaatacccacaacagatcgcgcgactctcgcgtctgtttctacttaggattattgctgatcttaagtctcccatcaccgatcgcgaaaaggttgagtactgatccgtcataaaaatcacactctttgcctaacaactttagctcaccgaaaacgcctcgaaatcactcctacccgaagcactgactgctgatcaaggacatctgacctgcaagggatcgaagttttatgatatcctttactagtgggaggcaaaagtgggtgggttgtttcaggttctcatcatggcagcgttgagtgggcagaactaatcgaaaatgtgctcagttgtataatttcctaatgatagttatcaacatactacgaaaggatttagaaatttatatttcactgtagcgatgaataaatataactggaaatgtctagaaaatggtttacacggcggcccataaaaaaatatgtagatcttagatattcaaaatttaaattatcttgcgatgtaagttaataggcaaaagtgcattcttagctactgaaagatcctttcaaaactcatttagctattaaaagtcaatgtatttatgttaataacaaaaacgaagtgcagaattcacacttttaaattagcttgaaggtaaatcaattttagctcccgttcaggccattttcaacgtgaaagtctttgaacacccccaccactgatattagcaaaccaactcccactgcataaccaacttcctgca
PCR verification status
Line verified as correct.