| ID | Coordinates* | Neighboring genes | Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16) |
Strongest annotations | Order |
|---|---|---|---|---|---|
| VT39513 | chr3R 6365463–6367614 (2151 bp) | hth, mir-4944 |
      active |
dorsal ectoderm AISN broad, ventral nerve cord broad, posterior endoderm AISN | VDRC |
Annotations
| stage | annotation term | intensity |
|---|---|---|
| 4-6 | posterior endoderm AISN | 2 |
| 4-6 | anterior endoderm AISN | 2 |
| 4-6 | dorsal ectoderm AISN broad | 3 |
| 7-8 | anterior endoderm anlage | 2 |
| 7-8 | dorsal ectoderm anlage subset | 2 |
| 7-8 | trunk mesoderm anlage broad | 1 |
| 9-10 | ventral nerve cord anlage subset | 1 |
| 11-12 | ventral nerve cord primordium broad | 1 |
| 13-14 | brain broad | 2 |
| 13-14 | ventral nerve cord broad | 3 |
| 15-16 | brain broad | 2 |
| 15-16 | ventral nerve cord broad | 3 |
Neighboring genes
| gene ID | gene name | distance | links |
|---|---|---|---|
| FBgn0001235 | hth | overlapping | BDGP FlyBase iFly |
| FBgn0263547 | mir-4944 | 26609bp downstream | BDGP FlyBase |
| FBgn0266260 | CR44955 | 74764bp downstream | BDGP FlyBase |
| FBgn0266244 | CR44939 | 77664bp downstream | BDGP FlyBase |
| FBgn0264788 | CR44018 | 99538bp upstream | BDGP FlyBase |
UCSC snapshot
Sequence
gacaacgacccaagacatccagacatactatacaggccagcaaatgttttggtattaatttttcttgttgttcctttgagcatctggcccctcaatctctggacttcatgctccccttggccgctcctgcaaaaaaaaaaaaaaaaaaaaacaccaagccaactgacaataaactttatcgcattcatgtgaatgcactttatgacacctaaccaggcaacagaacaggcagtcgaaggtggagaaacttgtttacctgcccgcaatttccacgggccgaacaaagaatttcgttgcggatttcgaaggcaatttttgcacgactgatttgaattgaaagactttgatgagctctacatgtgggtaagaatataatatgtaagtgcagagagagaaaagaagaaatagattttaacggacagttatgtatatttctgatatttctgttcgcctacactccaatattgatttctggcatatttatcgttctgtgccttgtttgaccagtccttttaatacattatgactgcaaaaatattaaaaggtctaacaagctagtacagagatatcaagtttactttccaaagacaataacgatattgttatgcattttttcgccgtgtggcaatgggcattttgtggtcgtctggctgactcgtgactcgtgcaatttcagtcgtccgtttgacggtcacgtgaccctaataaatcacagaattaatgttacgtaaaatggagttggcgttagcctgagtcctgcggagtcctggatcgcagaagtacagagctcaggacgaggtcctttcgctgcgaaagccaccaccgttgagtggttaaactatgccggccggaaattgaaaaacgtttgcggcatttctgataagccgaagaagagggaaaactacatttcccggagaaatgtaacttaaagatcaactggttaattttggaaatttaaaaatgttcatacgccatgttaaccagcacttgcacacagagaaaggaagagagatagctgcgtcgacattacggccattaaaaatacccaaaacgacaacgacaatttcctcattatcgtaaaatttattcaagcaaaataaattcattggtcgttaaccttgacactggttttcttttatttttccccgactttctgggtgtgtgtgtgtgcgcataaaactcatgctatgacgcgtgttaaatagtcgcctgtcaactggggaaaactttggcccgccagctgtaaaatgattttcccagacggcacagctccatatcgcctcaagttcgactacattaagtgtaggcacagacaaacaaattgtgattacgagcagaaaggaggaaaagccaaagctgtgcagaaaaaaaaacagaggctcaaggaatctgtaaaccaagcatgactttcattattttctttgtctggttactaaactaccaaaaataaataaaatggaatgacgccagtaagtatgctacaataatcgatacgagtgtgtgtgtgagctcttgttgttttaactgctcgactgcgtttttccgcacacaaacgcacaagcgtacaacgcacacacacacagacacaggcttaaaagagagcgatttgtcatggggctgccacgagttttcgggggttttgcattttccccagacattttgcccgcggctgttttcggtggcttaaagtgttaatgtatcagtttggcattgttttccacaatttatgcactgagaacttgttgaataccttcgccgacttatggccaaatactttaggacaaatatggcgcccaacttaatttaattttatacccaattcacatgtaaaatagtaacacccagagttaatataacccccgtatatatctaagttatggctgtgacaaaggaaggccagaaatagcagctgaaggaataaataagcggaaaaaactagaataaagaaaagcttttttcatcccaaaagctagctgtatacgtttgtgtggcagctgtctgtgtgcgtattggcgaaaactccgaccaactccgactgcctttccattcatttccattcctctccctacattttcctctcaagctgtcgtcgtcatttcgttctttatataaagcccgagtggagccaaggaaaatgctccggcacacacac
PCR verification status
Line verified as correct.