| ID | Coordinates* | Neighboring genes | Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16) |
Strongest annotations | Order |
|---|---|---|---|---|---|
| VT39530 | chr3R 6395394–6397650 (2256 bp) | hth, mir-4944 |
      active |
head epidermis ventral anlage, anterior ventral nerve cord broad, A-P stripes | VDRC |
Annotations
| stage | annotation term | intensity |
|---|---|---|
| 4-6 | A-P stripes | 4 |
| 4-6 | procephalic ectoderm AISN | 4 |
| 4-6 | anterior | 4 |
| 7-8 | ventral ectoderm anlage | 3 |
| 7-8 | procephalic ectoderm anlage | 4 |
| 7-8 | anterior endoderm anlage | 3 |
| 7-8 | dorsal ectoderm anlage subset | 3 |
| 9-10 | brain anlage broad | 3 |
| 9-10 | ventral nerve cord anlage broad | 4 |
| 9-10 | head epidermis ventral anlage | 5 |
| 11-12 | brain primordium broad | 3 |
| 11-12 | ventral nerve cord primordium broad | 4 |
| 11-12 | anterior ventral nerve cord broad | 5 |
| 13-14 | brain broad | 3 |
| 13-14 | ventral nerve cord broad | 4 |
| 15-16 | brain broad | 4 |
| 15-16 | ventral nerve cord broad | 4 |
Neighboring genes
| gene ID | gene name | distance | links |
|---|---|---|---|
| FBgn0001235 | hth | overlapping | BDGP FlyBase iFly |
| FBgn0263547 | mir-4944 | 56540bp downstream | BDGP FlyBase |
| FBgn0264788 | CR44018 | 69607bp upstream | BDGP FlyBase |
| FBgn0266260 | CR44955 | 104695bp downstream | BDGP FlyBase |
| FBgn0037818 | CG6465 | 105888bp upstream | BDGP FlyBase |
UCSC snapshot
Sequence
atttgcataaaccgagagcccccaagcgactcgagtcagtcagcagagtcagcagtcagccagtcagccagtcaggcagtgaggcagtcaggaggagatgccctaaattagataatgtctaaattggatttaaaacacgcattttgcgggtttccaaccaacacccattgaagacccatcgagacaacatcaaaatatcattagaagccagtgcttttttctgcttttctgctgtctgggcatttgaagggttgctctctctgatttgtatgcaaatgttttggctggctggaatgaaatttgattttccatttggtggaaaaacaggtgccagacactcgctctctcactctttctctcactgtgccactaagccgattataaagcgtaattaaattacgctggaaaatcatatggcggtgatgaagtaaagtacagaaatgtttcaattataaaaaaggggtacatttttagtaagctaagctaaaatgtgttaagagtttaaatagttatatctcgacaaattgctacaaatttttttttttttggttttaaaacccctttctaaacactatattagttgggtgacatttcttgagttctctggttgaacgtggtttttttatcgctgaactttggccaggttaataaatcctggtgctacccacattgtcattacgtcatttgcatgcacatatacgcaaagtcattggggcagccattatacaaaaaaaaaaaacaaaacaaaacaaaaaaaaggacactaatatacacttggacaagttcataaactttcgtttcattctgccccaaaggtctggccgtattattgttgtttttacctttgtttttagtgtggagattgcgtggcatttttcgcatatttctgctgcacatttcgtgcaaaacttaattatattaactgagttatttgcggcatttggcgcgctctgcgactccagctcttggccctctagagtacggtgtatgtagtatacatatgtatgtatatgggtgtgtatatgtacgtgctgcaggtgttgttgaacgacaaaaattatgacaacttaacttgactaactggtgtggctgtgcaaccgagagggagctagttgttcgcacctaaatggccagaatgacgggccaagaaggacggacggacggacggactgacaaactgacggactgaccaactgacgggcaatcaacaacataattaaagacaacaaatgctcatgtctccggatcttttcctctcctttcagttgtttttcttttcgtttgcgatcctccagacgctgctggtatcttttggtatgcaacgagttgcaattaaaaatcaataaaatgcgtgatttttgcaatttctgcgcttgccattgcaatttgtaattgccataattaaaatgttgaccagaccgaagagcccctttctctgcctctttctctttctcttaatcaaattttcacctaccaaaacgtgatcgtaactggcaggagtcagatggcaatgagatgcaattaaatgcgttttcaaacaatttcactttggactcgggccgggcactgttgttggactgactgcttttggacggaacgagggttgtgtgtaaggaaaccaccccgaaaaccctgacaaaatcaggcaatcaatcacaggaccgccgcataactcaccctcgtctacggacttttcggttagggggcgcaacaaatcggattaactccgccagactgtaccgaaatccacgcaggcgcattctcgaaggatgttcaggatgagtttcgagttctgattctgattccgagtcctcagctctatatctattgctgtccctctcccaccgacgactctacctcgcagggggtagcttatacatatatctctaacaattaacttctttggttgaggttttttcgccgttctgcggggcgtgtccggccatccctaaaaaactagatttctaaagaatcgaaaaaacgagcaatcaactgtgagatcgaaaagatctcgcatccagctgcgtttgttgatcgttagccaacactgggcacatcaaaggggagaaaagcgagtggcaaggggatcacgtggtcgtgtcagttgcctgtcaaaataatcattatcgatggtccaccgccgataaggaagagatcacgatgcgaggatcactgtgggccgtagattggcgaatgcagcagggagattgaggtggtaaaggttgtcagacagcgatttgactttggacgggctcta
PCR verification status
Line was not verified.