| ID | Coordinates* | Neighboring genes | Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16) |
Strongest annotations | Order |
|---|---|---|---|---|---|
| VT39542 | chr3R 6418595–6420751 (2156 bp) | hth, CR44018 |
      active |
ventral ectoderm anlage, dorsal ectoderm anlage subset, hindgut anlage | VDRC |
Annotations
| stage | annotation term | intensity |
|---|---|---|
| 4-6 | A-P stripes | 3 |
| 4-6 | pair rule | 3 |
| 7-8 | ventral ectoderm anlage | 4 |
| 7-8 | dorsal ectoderm anlage subset | 4 |
| 7-8 | hindgut anlage | 4 |
| 7-8 | segmentally repeated | 4 |
| 7-8 | pair rule | 4 |
| 9-10 | ventral ectoderm anlage | 3 |
| 9-10 | hindgut anlage | 3 |
| 11-12 | not active | 0 |
| 13-14 | not active | 0 |
| 15-16 | not active | 0 |
Whole-slide images
Neighboring genes
| gene ID | gene name | distance | links |
|---|---|---|---|
| FBgn0001235 | hth | overlapping | BDGP FlyBase iFly |
| FBgn0264788 | CR44018 | 46406bp upstream | BDGP FlyBase |
| FBgn0263547 | mir-4944 | 79741bp downstream | BDGP FlyBase |
| FBgn0037818 | CG6465 | 82687bp upstream | BDGP FlyBase |
| FBgn0037819 | CG14688 | 84864bp upstream | BDGP FlyBase |
UCSC snapshot
Sequence
caaggttgtgctgctggcatttgccttggattcagcccccccgttttctgcctaagatcgcgaatgcatattccactaaagccaagccgttggctccattgttgttactttttgcatcttttttttttgcatttttacttatttttttctttgcacacccaaggctggcaggcaggcagcccatttagagagtgcaaaaatgtcatatgcatcattaaatcgttctgcttcatattgtcgttcgcatgggttcgctcgttgctcgacttccccccgtctatatgccccgatatcgccatcgcccatggactactatatcccccgagagcaggcaaatagcaagagcgaaaagtatggcaacgctgtccaataaaatgactaaacaactcagttcagtctgacgaacaaatgctcataaattgcgttcgcttgctgtggcttttgctaaattcactgtgatttattctaaataaaagaaaattattcaattgtcgtcgttgttttgggtcaaggtgatgcacacactcaaataaacacacacacacacacacaagggcacttggggagagaaataaaaaaaaaaatagccatgatctttggctttggcaacttgctgctaaggagactgtgcaactttgttgccagctttgcttttcgtttttttttcttcgtacttaccagtgagtcgacttcgggatctgcggtataatagggtttctgtgatcttatctgcaaggagaaagaatgagaaggacatggttagtaagtgttaagtttacacaatgaaaaatattttttgtaatatcaatatccatagttttttctattcagagctttttccccctctgtacagcacactgcgaccagctgtcctagtcaaccatgcgactcctatccaaccgaccacacttctcttttatttggttctttttttgccattttatgatggcctggtggccgataagctcttgccaaaccaaaatattgtacacattataaaactacaacagcaaccataagcaaatcggttccacggcgagcatgggaaacgcaacatttgtgctcatcagctcatcaacggacccaaagccaaaaacccagaccccagagcccagagcccgaagaggtgacgatgcgactcgctgtgaccataaaagagattctcgcttttatagcaatcccgaacacacagagatataaaaataaaccacacacttagataaagatcacaaaggcaatatctggctagataaaatgccacacagaccgaacgagaaggtcatcaaaatgctgtgcgaattatttgaaatccgttgtcgaactccgactctttgctggatttggcagtttggtgttggtgtgttggctctcacggaactgagccacaataaatgaccgagacgagctcgggtcttcagttttcggtcttcagtcgttagataaacagatatcgccgacaaacacccgctgcgatatcttatataacggtcgacggacctgaccttgtccaaatgcgtatgtgttacttgtgtttttgtgcaaagttgttgctggctgaccacccagtaatgtgcaacaaggttgcccggcaggcggcaggttttacattgttccggggataaaagacatgaccctgaaaggagctacgggcataactgatctcccgttgtggattgccaatgagaggattaaggcaacattgtaaaatgtagtctaatcaaacaggctaggtgcaaggccacactgattaaagaacataattgcatggtcacactatgcacttggaatactgcaagacatcagctataaagctagctgttttcaacaaaagctgtgtgtctcctgcagctcctgcaacaatgatcttacagatataagaaacccacacagaatcgagtccgagttcgactccagcggtccaaggcagtaacggcaatttgaaatcaactgagccatgtgcagctaataattacacactttgcacacggacggcgaggcgggaaagacttggaagacttgtatctagatatgtgggcacttccacaccattgtacgaaatggtcgtatgagaaaaacgccccattgtgagtaccataccatgccatgccatactacacattacatacaataataacaaacacaaagcacggccattga
PCR verification status
Line verified as correct.