| ID | Coordinates* | Neighboring genes | Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16) |
Strongest annotations | Order |
|---|---|---|---|---|---|
| VT42046 | chr3R 11209303–11210937 (1634 bp) | Rbp, h-cup |
      active |
anterior endoderm anlage, posterior midgut anlage, posterior midgut primordium | VDRC |
Annotations
| stage | annotation term | intensity |
|---|---|---|
| 4-6 | not active | 0 |
| 7-8 | posterior endoderm anlage | 2 |
| 7-8 | anterior endoderm anlage | 2 |
| 9-10 | anterior endoderm anlage | 3 |
| 9-10 | posterior midgut anlage | 3 |
| 11-12 | posterior midgut primordium | 3 |
| 11-12 | foregut primordium | 3 |
| 11-12 | interstitial cells primordium | 2 |
| 13-14 | head subset | 3 |
| 13-14 | midgut interstitial cell | 2 |
| 13-14 | midgut subset | 2 |
| 15-16 | head subset | 3 |
Neighboring genes
| gene ID | gene name | distance | links |
|---|---|---|---|
| FBgn0262483 | Rbp | overlapping | BDGP FlyBase |
| FBgn0038334 | h-cup | 631bp downstream | BDGP FlyBase |
| FBgn0038331 | CG5073 | 9345bp downstream | BDGP FlyBase |
| FBgn0038332 | CG6136 | 11370bp downstream | BDGP FlyBase |
| FBgn0038330 | CG14868 | 13637bp downstream | BDGP FlyBase |
UCSC snapshot
Sequence
cgagtctaagcagccatgccattcaatcgatgcagtacggaaccggacagacgtccgtggagaaactgctgagcggaactagtggaatcactggcattccacccctgccggtaaatattcacacgatgaaggctatgccaacggcattaagtcaggtaaaccacctattttcaatcgcaatgaactacgaacaacaacagcaaccacagcaattatgtaccgctgccgatcgatttgcttaaaagcttgccacatctagaaagtgctatatatatgcgttataagttgtatgtaaattcgatccgtttgagtagccatatagcctagccatatagcatatagcatatatagcgaccatccgcttctgttgatcgtcgctgctgcagccaccggccgtttgttgtagtctcattactgatgaaaataaatacattcacatcgaaagccacccaccgaatatcacattacactgaatcacaaacacaaccatttaaaaactaaatcgtttgagtatctgtattcgacctttgattgcctgttacataagtattctctgtatcattgaaatcaaattcgctggcatgctataaaatttcattgtaaatcactcgtatcgaggatggtattagttataaatgtcactaatattattcaaatgtatattcatatatcattggtcatgcacaaatcgaagaactgcttcttatactcagttcatttcttgcaagctaatcaaatagttttgaagcattccttcgaagttcatatattgttaaactgattgtacacaacctagctcatgcatctgctgcatttacagacatatacatacttactaagtttatatctcttgaaggagttacatgtttgaaagctttccgttactcgttgataaactttttaatggtgatgattggatgctagccgtgttgcataaccacgaatcctcgcttggagacggcttaagttaattgcagattcaataggcactcatgaccagccgaaaatcaccaccaacatgctcagttgttcatgcatagatgtccatttaagacgttctagatgcctttttccaatggcagctgaataaacgtgtatctgtgatctctctttccgttttatgtgctttctctgtcttccctttttttctctctctctctattactactactactgtaataatgatgaaatctctaactcgattcccataactccgattatgattgatgtgcggtcaaaacgaatcaatcaatcgactcgatctatatgtatgtctgcatctgtatctctgtgtgtgtgattctatgtttgtgtaacaacacctgtacaaataccacaaacacaacgaataccctgtaaattctgaaaaaaaacccgaatattccaaattccacacaatacacatacatactaaacggcaactgaaattaaacccgaattgaatttgaattggaaacaaatcaaattacgaatcgaattgaatcgaaccgagaagcgcggaacaatacagctgtacaatttgcagagcacaaccatgcccctcctgtcactcaactcgcataacctgccgcccgccggctcgaccagctactcagctttgggcgccggtggcggcacctcgctgacgcacccgac
PCR verification status
Line verified as correct.