| ID | Coordinates* | Neighboring genes | Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16) |
Strongest annotations | Order |
|---|---|---|---|---|---|
| VT42356 | chr3R 11825329–11828184 (2855 bp) | srp, CR42839 |
      active |
hindgut anlage, posterior midgut anlage, brain primordium subset | VDRC |
Annotations
| stage | annotation term | intensity |
|---|---|---|
| 4-6 | not active | 0 |
| 7-8 | hindgut anlage | 3 |
| 9-10 | posterior midgut anlage | 1 |
| 9-10 | hindgut anlage | 3 |
| 11-12 | brain primordium subset | 1 |
| 11-12 | ventral nerve cord primordium subset | 1 |
| 13-14 | ventral nerve cord subset | 1 |
| 13-14 | brain subset | 1 |
| 15-16 | brain broad | 1 |
| 15-16 | ventral nerve cord broad | 1 |
Neighboring genes
| gene ID | gene name | distance | links |
|---|---|---|---|
| FBgn0003507 | srp | overlapping | BDGP FlyBase iFly |
| FBgn0262028 | CR42839 | 4714bp upstream | BDGP FlyBase |
| FBgn0264982 | CR44133 | 5943bp downstream | BDGP FlyBase |
| FBgn0038391 | GATAe | 9498bp upstream | BDGP FlyBase iFly |
| FBgn0022787 | Hel89B | 16157bp downstream | BDGP FlyBase |
UCSC snapshot
Sequence
cggcggtcaatggacacaacagctccttggaggacggctacggatcgccaaggagcagccacagtggcggcgggggcggtggtactctgccagccttccagcggatcgcataccccaacagtggctccgtggaacgttacgctccgataaccaattatcgcggtcaggtgagtgctgcccccactgccatgattgctctgagctcccccctaaccagcatacacttcactcacttgcagaacgatacctggttcgatccgttaagctacgccacctcctcttccgggcaggcgcagttgggcgtcggtgttggagccggagtggtctcgaatgtgatacggaatgggcgggccatttcggctgctaatgcagcagctgcagccgccgcggatggaaccactggacgcgtagatcctggaacctttctctccgcctcggcatcgttgtcagcaagtaagttactatttgaaacggaaaaccaagaatgagtatagactagtacataagacactcaccgaacgtacacacaaaccaaaatcctttccgatgcttgtttgtcccatttgtctgggcaaacgaaagagagagggttttaggtagaatttcacacgcacaccaggcgagaaggaaacccatatttgcataacctgagcaaaccaagacccaactggatcagccactggtggccaactgtaagcagctgttgtaatgcccatacactctttctcatttctagtgcatttttattatttatacatatacttagtggttaagccttacgtctctataataaattcaattaattttatttcaactcttgagataaattcaaaccaacaaaaagacacctcaaaagcaaatctaaatattaaaatacacacacaatacgcaaatgcaaaaacagcaacagcaaacattgcaaaaccaaaccaaatcaactcaaatcaaacaaacacctagcaaaaccttatgacttattccgatatttctatgtcaatctttgaagcattattcgatgccgattatttcactgaggggcgagaatgtgtcaattgtggtgcgatttcaaccccattatggcgacgcgataacacgggacactatttgtgcaatgcctgcggcttgtacatgaaaatgaacggcatgaatcgacccctaattaaacagcctagaagattggtaaatgtctaaaacaaattcacaaaatcacaaaactaccaccagcaattactactaaccaataccaatcaatcaaaacaaacgcttttgtgtggaacaaaatttctgtgtgcaacatcctctctcagtgtttagtgggtagtgggtactcgtaacttatagaaatccgcatccgccagcatcagcaccaccgccccaccttcacccagccccccccccctgaaaagctccaatgctccaagagagtgaaaaaattaattgaatttattatttattacgcaatgccaactagtttaatcgaaaagtgacatcaaaaacaaagaaaatctgatcaatctgcatctgcatctgcatctgcttcttgtgtactacaaccaacaacattctgattgctcaattccagtggccgctgaatcaggcggggatttctataaacccaactcatttaatgtgggcggcggtggccgtagtaaggctaacacgagtggtgccgccagctcctactcctgtccaggctcgaatgcaacctcggcggcgacttcggcggtggcgtcgggaacggcagcaactgcagcgacgacgctcgacgagcacgttagtcgcgccaattcgagacgcttggtaggtcgcccattaattaccgataccgataccgaaaccaaaaaccaaaccaaatcaaacaaaaccaaccaaaccaaacccataccaaaaccctaccaaccaaccgaaacccttttgaatagcaaaaccgactaacagagagcaagtagtcactaacccctagcccagaatcgattctaaccacttttgactaacccgtacacccgtagatctgtagatccgtacacccgtaaacctccttggccactgagttgccatagaaaacgttgttccacacgaaaagctactgcatcccgagcgcttctagtcttaactaattcgttgatttcttgttgcaacatctagagcgcctcaaagcgagccggactttcctgctccaactgccacaccacccacacttcgttgtggcgccgcaatcccgccggagagcccgtctgcaatgcatgcggcctgtactataagctccacagtgtcccacggccactgaccatgaaaaaggacaccattcaggtaagtcatcctttaaaaaaaaagattgcagctgaaagttcattcgtatttattagcttgaaaaggaacttatttttaacataacaataatcagaaaatatttggttcaataattaaatataaaagtttaagccaatgtatacagcacatataaaataatttgttaattatatggagaatgattaagaatacagctcgctaacattaaatgtggaatattgcacactataactatataatcttaccattacagaaacgcaagcgcaagccgaaaggaacgaagagcgagaagtccaagtcaaagtcaaagaacgctttgaatgccatcatggaaagtggttcattggtgaccaattgccataacgttggtgtcgtcctggacagcagccagatggatgtcaatgacggtgagttcctgcgacttttcattccatgtgcatgcctaactagtgatgtttgctttctttttgttccccgctcacctggtcagatatgaaaccacagctcgatctgaaaccatacaactcatactcatcgcagccgcag
PCR verification status
Line verified as correct.