| ID | Coordinates* | Neighboring genes | Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16) |
Strongest annotations | Order |
|---|---|---|---|---|---|
| VT42359 | chr3R 11832511–11834661 (2150 bp) | CR42839, GATAe |
      active |
anterior midgut anlage, posterior midgut anlage, malpighian tubule primordium | VDRC |
Annotations
| stage | annotation term | intensity |
|---|---|---|
| 4-6 | posterior endoderm AISN | 2 |
| 7-8 | posterior endoderm anlage | 3 |
| 7-8 | anterior endoderm anlage | 2 |
| 9-10 | anterior midgut anlage | 4 |
| 9-10 | posterior midgut anlage | 4 |
| 11-12 | ventral nerve cord primordium subset | 1 |
| 11-12 | anterior midgut primordium | 3 |
| 11-12 | malpighian tubule primordium | 4 |
| 11-12 | posterior midgut primordium | 3 |
| 13-14 | midgut broad | 3 |
| 13-14 | malpighian tubule | 3 |
| 15-16 | midgut broad | 2 |
| 15-16 | proventriculus | 3 |
| 15-16 | malpighian tubule | 2 |
Neighboring genes
| gene ID | gene name | distance | links |
|---|---|---|---|
| FBgn0262028 | CR42839 | overlapping | BDGP FlyBase |
| FBgn0038391 | GATAe | 2316bp upstream | BDGP FlyBase iFly |
| FBgn0003507 | srp | 2709bp downstream | BDGP FlyBase iFly |
| FBgn0264982 | CR44133 | 13125bp downstream | BDGP FlyBase |
| FBgn0003117 | pnr | 19410bp upstream | BDGP FlyBase iFly |
UCSC snapshot
Sequence
tataattgcgacacgggttggctgaggaacggagcgcgttttaatggaaagtgcaaaacttactctgccagcaacgaaataaccacactcggtaagatatctgagtatatatgatttttttacatgcccattccatagataggcaatctgtatctgtggcacgataatgcttataaataagataatatgatttgataatggtatttaccatatgcagaaaccgaagccgccaagcagctcagctgagtcgtgtaagtcgctcgatattctgccatctatacaccatatatatagagtataagaaattcacattatccctggtttttctcggctgcggtgcacctaattaaatgtttgacatctgcatgatttgtttagcgtgaaaatgctgaaaaggtagaaatgcttaggcataggtagaccataatatgggtatgggttcaggtcggtattgtgcaaacagattgcatttagagcagtcggatcccccacccaatgctcgatttccaccctgcgctcctcggctctttctgtttgttgttgacttgactgctttttgatgtcttcttcgggtggtgttgctgtttttttcgtggccttatcgccaactgacgtttgtacctcagaatgtgtacttaagataacgaaaacgaggaagaagcagccaggcctcaaagtaacacgaagggggctacatccacatcagcagcaactcaaatgaaaaagaatgtcgccagctatgaattgaactttcgatggagagacacaagctttcatagccaaacagatggataagatcgatgggaaaaattgttatgctcggaccgaaaactgcacctcatggatgtttggcgatttcttggaaatacaattttgaggtgcctttgtcgtatcgcgggcagtagttaataagcatattctaatctaatcagcggatcgttaattaacttccaaagttgactttcgctttctcaagtgttacttgagcgctgctttggcagttggaatttatacacagggcccagcagtatcttatcgatgagccaaagatcaaattttcaattctcaaaacacacgccaaaatttccacaattcattggaagctcttatataaacggctgattttgttaggtgcactgtgtggatagccggccattgagtaatccacatttgatatatattttgtgattattaaagcactttatcacagatttatatccttagaggcaagccgatcatctctttttttttcgtttcgggacgaacgcgcaaaagcaatgtttccatgttgaaaatcccagttacactcaccaactgtgattagattccatgccgctgggcgtccaaacttaaggaattactgaaaaattcaaattattatcgcttattatcttgggacattatcagttcaaacactgatatactgatacagaccgcgagagagagccatgcccaggcccaggcccagaacccaaaccagcacccaaactggaaatggaaccttaactggctgcagataccccaaactgataccgatatcctaccaacaacaacagcagcaacgactgcaacaacaactaacaaccagcagcgagtccaattgataggaaatcttcattatcttataaatacggctgcattggtggtcgtgtatcgctaaaaagccaagattagatacttttatctagctgggtcaacctcgtccccttgtccacaacccatccccaatcccgcgcctcgaacggaattggcgacgtcacacatagagttcccccattatcggttaagcaaattccaagaccgactcggatgtttgtccaagaggaggagccgtgcactaggttaagtatccgccaccgattgacttacgatttcggttgggtcttgttgggggcctgccaccgggagggatatctctaaattctagttgtggagtcgaaatctctgttaagatacgttaacttatctaaggccactatctattctcagatattcgatatgtccctctatgtataccatatacatacgtacgggccgtattagaggcgttggcgatagggaaaatcgctttggttgataggagcaatcagcgggtgtgcaacacccaacggagttttcattccagaagagcatttttcctcagacagccgc
PCR verification status
Line verified as correct.