Fly Enhancers @ Stark Lab

ID	Coordinates*	Neighboring genes	Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16)	Strongest annotations	Order
VT42494	chr3R 12080406–12082714 (2308 bp)	tara, bor	active	brain broad, ventral nerve cord broad, lateral epidermis primordium subset	VDRC

Annotations

stage	annotation term	intensity
4-6	not active	0
7-8	not active	0
9-10	lateral epidermis anlage broad	1
9-10	ventral nerve cord anlage broad	2
11-12	lateral epidermis primordium subset	3
11-12	brain primordium broad	3
11-12	ventral nerve cord primordium broad	3
11-12	ventral epidermis primordium subset	3
11-12	peripheral nervous system	3
13-14	brain broad	4
13-14	ventral nerve cord broad	4
13-14	trunk epidermis subset	3
13-14	peripheral nervous system	3
15-16	brain broad	3
15-16	ubiquitous	2
15-16	ventral nerve cord broad	3
15-16	trunk epidermis subset	2

Whole-slide images

All stages Quality: OK

All stages Quality: OK

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Neighboring genes

gene ID	gene name	distance	links
FBgn0040071	tara	overlapping	BDGP FlyBase
FBgn0040237	bor	6671bp upstream	BDGP FlyBase
FBgn0020407	asun	9587bp upstream	BDGP FlyBase
FBgn0020399	Mst89B	12328bp upstream	BDGP FlyBase
FBgn0261286	Mat89Ba	13645bp upstream	BDGP FlyBase

UCSC snapshot

Sequence

gggggtgagcttttagctgattggtttttagcgcagcttttaagcgcacacgacgtatgcgcaacgagcttcggcagcattacacatacgaccagttgtcaacagaacaatgagcaatgagtgaacgccgcctcgcctttaaaacgacgacggcgatgataagaatgagtcagccgaagcggaatggcaatgagtgcggagcaaaaccaataattccaagaagggaacttctcgctgtcgcaaaagaagacgttgtatggttcttggtttggttggttcgttcccaaaagggcgaaccatccggagtccggacggccagcatgtctagactcgctccagcccctataccaaaaataacaccgaaaatacagctgcagacgcgaacgagaacggtacaacgtcgagggatgaaatgcgatgatgagacatgcggcagtggcaaaggcaaacccagaggcagacaggccaaacaagggaaaccggggcagagcacagggacagggacagaggcaagggctggggaacggggcattggcagggccgggggtagaaaaatgcgaaacacatgcgactcagcgacgacggcgaccgacctcgatgacgataacacacagcgcgcacagcacagcggactgaaaacgaaacgaaaactcaccctctaaatcgggttctcgtattatattcccccagtactgaagggaactgcagcagcagcaacatcagtggcacggtcgcagcaacagcactggcaaatatgcgagcatatggcaacccttatggatatatgcgtatgacaaaggtcgttcctcggccgacgtactacgcacagatgttcaaaactcagtggggaaagactcggttgaagaagggcacggaaattgaacagagtgccggcaattgaagggtggcaactcttaaatatgggcaacgtgagttggaaatccccagccagactccgcgatcgatagatatagtcttaaggacaagggtgctgaaattgtggggaagaaggaagcttattgaagctcaaaatttaagggatatatcaattaaatttcagatgaatttgtatctttagatacattctgaaatacactaaataatatatctagatttatgtaattgagatcccaaaataacatatatgtacattctgataagtaagaactatatctccaaaaaaaaaaaactttatctacaattttaaacctttaaatataacgtacatttaatggatatatatgtatatttagttttcccgagaaagtattctccggcattgtttggttgcactgttgatcaaaaatcttgactggagcagaactcgaaaacttaaaaatagtttcaaaacagaaaaaagaaacggaaaaaagtcccacagcaaatgtggcggaagttgatgggaaagtgccagcaaaagaagagcattcagaatgggaagactacggcaatcgtggcagcccacacgattctcgaggttccgccctctcttttcgtctctgtgcgttttattttaagaagatttcgagcagcgtcgatgagcaatgccatcagtcgaaaggaggcggaggtgggactgtggctggggtggtggagagtggatgagtgggtggctggggtgaggcgcagggtggctgactgacggaaagacagcctcgacttggctggcttggctgctgttattgttgccgcctggcattttccattccattttcatggctcgagtgggtggaaggaacgagggtggtgcgttggctggttgagtgggcgaaaggggggagttcaagtccctgcctgacttccattttcttgataagtttttagctggctgtgtgtcctttgttggctcgtgcgaaccgtgaggaaatttatgatgcacagagggaaaataccaaaccgaaaacttataaataaagaaatttatatgagaacgattgtagcttaaagatctgtgttctactttagaaatatttaattgtaggttttgtgtccatcacaattatttctctaagtttacttgccgtgctgttcgcaacgtgccttatattttggcggcaaatcactaaatttatgttatattccctcttattgcaggtgaattccgcgatgggtcttcaagcaacagccgccaccaagcggaagcatgagctgaccttcgacagcaaggatgccaacaccacctacacgggcaactgtgccccgccccccgtcaaggccaacaagtgggccatcagcaacaacaactacctggagtcgctcgaggagcagcagcagcaacagcaatcgccatcggagccagctgttgagtc

PCR verification status

Line verified as correct.

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