| ID | Coordinates* | Neighboring genes | Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16) |
Strongest annotations | Order |
|---|---|---|---|---|---|
| VT4308 | chr2L 8557344–8559502 (2158 bp) | Sema-1a, tRNA:CR31895 |
      active |
mesectoderm anlage, posterior midgut anlage, ventral midline | VDRC |
Annotations
| stage | annotation term | intensity |
|---|---|---|
| 4-6 | anterior endoderm AISN | 2 |
| 7-8 | posterior endoderm anlage | 3 |
| 7-8 | anterior endoderm anlage | 3 |
| 9-10 | anterior endoderm anlage | 3 |
| 9-10 | mesectoderm anlage | 4 |
| 9-10 | posterior midgut anlage | 4 |
| 11-12 | ventral midline | 4 |
| 11-12 | hypopharynx primordium | 3 |
| 11-12 | anterior midgut primordium | 3 |
| 11-12 | posterior midgut primordium | 4 |
| 13-14 | ventral midline | 3 |
| 13-14 | ventral nerve cord subset | 3 |
| 13-14 | amnioserosa | 3 |
| 13-14 | dorsal epidermis subset | 3 |
| 15-16 | head subset | 3 |
| 15-16 | ventral midline | 3 |
| 15-16 | ventral nerve cord subset | 2 |
Neighboring genes
| gene ID | gene name | distance | links |
|---|---|---|---|
| FBgn0011259 | Sema-1a | overlapping | BDGP FlyBase iFly |
| FBgn0051895 | tRNA:CR31895 | 13544bp upstream | BDGP FlyBase |
| FBgn0051603 | tRNA:CR31603 | 15513bp downstream | BDGP FlyBase |
| FBgn0051604 | tRNA:CR31604 | 15722bp downstream | BDGP FlyBase |
| FBgn0028394 | CG17834 | 15906bp downstream | BDGP FlyBase |
UCSC snapshot
Sequence
gctcaacatttttgctcctgctcgtttttattatatgtttgtttgttgctgtttgaactcttgaagagcgaatataaaaatttatgcttgcactaaaccgaaaaatgaagaggcacaaaacgtgtccgtgacatttatgatgtgccacattgtgtacctaactcaacctcttctagttacctctcatatatatatatattttttttttactgattctttggcctcatcaaagagtataacataaattgtttactttttgaaggcactggtgtggcttaatttttgtttgttcggttgtcttgtcgcaattttctccagtcagcattttttttacttcttctctttgctctttaaattatgaattttattgcccttaattgatgacctcccattgataaccacaaagtgtttcctcaatgtgctacttctccttcaaattgattgagcagatcgtaaatacatttagtacgcttcctgaattttcaagtaccgccagcttcattttcacccgtgtttttttttttcaatgctcctccatacaggttaagtacttcactaatttgtgacaaacatcgaaacgatgtaagttcaaatcgtggctccattcccccaaaaaatcgagtttgtttcagggaatttcattaatattttatgactcgctcttttagtgttcttgtttgtctcgtggttttatttgataaggtcaaaaagacctaaccatacaaatggggatgattgattgtgcttttctggttttgttaatggttaactttttatcgctttgtaaatgtcaactttgttcaatgggagggtttcgaaatcattttttagtcacgttttgtttgagaagattcgaaatttaactgtattttgtggaattgaaatcatttgcattatagttaaaaaaaaaaacaacaacatatattgctgtgattgtcttgagttttataaatctgtttaattcccgtatatcaatatcaacgacttttgcaggattaccagggtcagcttcattatttatgagggagtttaagccgaatgcaaacacgcgaccaaaaaggccaagtcaaatggtccatcatggcattgggcatacgcaaaatttcaggggattatcaaatgcaaaagagctgatgagaagtgcgctgccccttcttggtggccataaatcatggaatcaaagtgccacatttttgactgagtttctgggccggggttatgcgttaagccctttggccgaggtctaacacgtactaaatgcttgtcaacagaaatccggagatgggggaatccggacggacgggcaacgtgacagtgcgcagacgtgacgtggaaagtatttatgggaaaatatttgttcaaaaatttcttactgattgtattggatagaaactggcagcgaacggaaagggaaatggaaatgagaattgattttccagcgctaaataaatatgagacattttccaatgtcaatgttatgatagatatgatgcagagaatacaggcgaaacttaagtgctttgaataatttcaactgggaatttcactacagacctggtaccatgaacattttcaaaactcgtttgcttttgtcaaggtatttttgcaatttattcaatcaactgtacgaatttatacaactaaacttcacttgtccactcaaattgaaggacttttgcttaaccatactttctctttgcatcgcattcgttccatcatcaaattacaaattggtttccatgcagttttgcataaaattccaaggactccggcggcgtgaaagtttcgccctctggaaaattgctagctgagagcatcaatttgcatgtttgcaaagtgttagctgcaaaaacgaaattaataatgaatcgactagaggaatcagcatcaaacttatccataacaagcgagaaaacaaacaagcaagtacatcggagtgcaaaatgcatactacaagaaaattcggcagcataaagtgttgccaaaaatggggaaaatggaggaaaggacgctccaagttgcgaaaacttgagcaaccacaaaagaatgaaattcaagttgctggggcaacattaactgagcgccaacaatgagagctggcaacaagaaaagtacaacaataaatagcattatgctaatccaggccaaacagaatgcgg
PCR verification status
Line verified as correct.