| ID | Coordinates* | Neighboring genes | Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16) |
Strongest annotations | Order |
|---|---|---|---|---|---|
| VT4448 | chr2L 8841573–8843738 (2165 bp) | SoxN, CG32986 |
      active |
ventral ectoderm anlage, ventral epidermis anlage broad, brain primordium broad | VDRC |
Annotations
| stage | annotation term | intensity |
|---|---|---|
| 4-6 | yolk | 2 |
| 4-6 | procephalic ectoderm AISN | 4 |
| 4-6 | hindgut AISN | 3 |
| 4-6 | ventral ectoderm AISN | 3 |
| 7-8 | ventral ectoderm anlage | 4 |
| 7-8 | posterior endoderm anlage | 4 |
| 7-8 | procephalic ectoderm anlage | 4 |
| 9-10 | ventral ectoderm anlage | 5 |
| 9-10 | procephalic ectoderm anlage | 4 |
| 9-10 | ventral epidermis anlage broad | 5 |
| 9-10 | brain anlage broad | 4 |
| 9-10 | dorsal epidermis anlage subset | 4 |
| 11-12 | ventral midline | 4 |
| 11-12 | brain primordium broad | 5 |
| 13-14 | ventral midline | 3 |
| 13-14 | brain broad | 4 |
| 15-16 | ventral midline | 2 |
| 15-16 | brain subset | 3 |
Neighboring genes
| gene ID | gene name | distance | links |
|---|---|---|---|
| FBgn0029123 | SoxN | 11904bp downstream | BDGP FlyBase iFly |
| FBgn0052986 | CG32986 | 21203bp upstream | BDGP FlyBase |
| FBgn0052987 | CG32987 | 22238bp upstream | BDGP FlyBase |
| FBgn0052988 | CG32988 | 23291bp upstream | BDGP FlyBase |
| FBgn0052983 | CG32983 | 24277bp upstream | BDGP FlyBase |
UCSC snapshot
Sequence
caaatcaaacgaaccgcaaacggaggatccttcgatccggagcaggatcgagtgcacagtagtccgcaagcaatgattacccatgcacagtgcgtcctttgtctactaaatcgaataccgcaaaaaaacacacagggatcagaggagaagtggagataagaatcgaaattgtaaaatggtacgtaaaaatgcgaggattcatagttcccagaaaggccctggaccaacccccttccaccaggatttcaggacttcaggacatcgggacaggacctaccctcccagctctgaaatactcctacgcatcagcctctgcctgttacatcctgtgtgcaaaggtggcaaaaactcggagctacctgcggagcatcggcgtaaaatgtgtccctcgtcctgggtctcggtaaagatttattatcctatacatttcatgaatgcgatatgcgagtgagccggcaactgtatctgcatctgtgttcgtatcacactatctgtgccagtgtgtgtgtgagggtttccctggaaaactactactaccacaactactgccaactaaggcagcagcgaaaagcaacaacaacactgggagcacaaaaggtgtgcaccataatggctgacaaaaagtcggccttagcctttaatagcactgagtttaacagccaacacaaacatggcccaactgccatgcactgcccgaaaaaaaacccatctgcggtttgcatcaagtgcaagttcaacttgcagggaaagtttcttttatgactctgtcttaggggtgtcaatggcttccagtccgaaacatcaaacgaatcattttattaacttaactttacattacctatattgaacatacatttgaagtttcataatttcagagttgtctaataagttttctttcagtgcacagcagccaactccatagaacccattcgctgcaatccaacaaaatggcaacattcacttctcacttacaattgaagctggggcttccttcgtttttttcgcatggaaaaagtgaaaagtgaaactatttgctgttgtttggttaagcgttttaaagtccgtccgtctgcgagttgagttctggctggataggtgagtgcgtgtggatggaccccgccaacaggatggcactaggatggctgaggattggagatggttcgggtttggatctgtctaaatgccaattagcataacaaaaaactcagcgaatgtctgagcgtgaggcgagtggtggggaggttggtggcattatgaaccgtcaagccagaacccttacttattatcccccgattccaggggtcccctaaatgcggactcaggtgtcgttcccatgtgggcgagatgataatttggtgcccggggctgcagactctccgctgatgtagattatgttgggacggcacaatcagccagccagacgtcagtgtgggcgcataaattgtttactttcaactgatatgaaatgtggaaatcgtgataatatacgaaagatgtatttgtttggggaaaatgagaaacagtgtgggaaaagttatgaaaggcctcaaagggcgaaggcaagggtcttctttaaatgagtatttgttcattaaagaggttttagttcaataagtgtataagcgaataatacgcttgttggatgatttgattacagatacggtaattataaagcaaatcataagttaatatatatatataaaaatatatattattaaaaaatatatatttaaaataccctgcaatcattttatgatggcattcattaatcatcgaaacattaacaagttttcccgaatcaaattttattggtcgtttcgtcgagtgctcaaatgacccgtaaaaaatcagaaaccagaactatacatatgcataaagtgatatttatgtcttttggcgatcgtccccacaaacagcgtgaggatagattcagtataaaatttaaatttctaaatagtaacatgaaattcggcaaactattaaattaagagccgaaaaccaaacaaaaatctgtcacaatgtttattcatacgcgggaatttatgtggcatttcagagaggcggtgacaacggctagccagcccattttccaaaaccaaatcgagtgtatctttttcagggtggctaggacagtatgaggatgttcgaggatacgctctgttcgca
PCR verification status
Line verified as correct.