| ID | Coordinates* | Neighboring genes | Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16) |
Strongest annotations | Order |
|---|---|---|---|---|---|
| VT46786 | chr3R 20250370–20252449 (2079 bp) | nAChRalpha1, CR43455 |
      active |
brain primordium broad, ventral nerve cord primordium broad, brain anlage broad | VDRC |
Annotations
| stage | annotation term | intensity |
|---|---|---|
| 4-6 | not active | 0 |
| 7-8 | not active | 0 |
| 9-10 | brain anlage broad | 1 |
| 9-10 | ventral nerve cord anlage broad | 1 |
| 11-12 | brain primordium broad | 2 |
| 11-12 | ventral nerve cord primordium broad | 2 |
| 13-14 | brain broad | 1 |
| 13-14 | ventral nerve cord broad | 1 |
| 15-16 | brain broad | 1 |
| 15-16 | ventral nerve cord broad | 1 |
Neighboring genes
| gene ID | gene name | distance | links |
|---|---|---|---|
| FBgn0000036 | nAChRalpha1 | overlapping | BDGP FlyBase |
| FBgn0263409 | CR43455 | 15219bp upstream | BDGP FlyBase |
| FBgn0039200 | CG13616 | 30887bp downstream | BDGP FlyBase |
| FBgn0039199 | CG13615 | 32779bp downstream | BDGP FlyBase |
| FBgn0039198 | CG5768 | 34310bp downstream | BDGP FlyBase |
UCSC snapshot
Sequence
acgttgcaggatcacaggactcaggggtgcggaagagcggactggcgagtaagccgagctgaggggtggatttcagtgtatccgctttctctgctcaattttttttttctttcgctttttcacccgtttgagtgcagccagcgaaattgcagcaaatattgaaagagaaactatttgttagctagccgtcaatttgttcgtaatgagctgcggctgagtccaaagtccaggctctttgttgttggccaacttttgttgttggtgcttttgctgttgctgtgatgtgccacaaatgaaaatgtctttcagcgtggtaaatattttatgtcatttctgtgcacgtcttttgtgcgcttgcttgtagttgcctgggtgcttcatttttgttacttttctttttttgtttggttcggcttgttgttccctttttttttttttttttttttttttttgtgctggcatttttaagcgccagtaaattttttagtaggcagtgctgcgcagaccaaccgcagcaaaagcagcaacaataaccaagtgaagctctgccggaaacgccgtcgacggcaaaatggctggcgagtcaacttccgcttgttgtatgtgagctgaatgtgtgtgtgtgttggtgtgtgggtgttatgggtgctgtatgattgtaagggtgcgcgctctgggcagaggggctcttgcaattttccagtcgagttcgtttttcatttccgtgttatttgttttgcatgtgccacttcgtcccttatcccatttctttgttactccctcgccgcctttttcgttgcatacttctcggctgatatattaacatggccgcaacggcagctgccatttttggcattgttgctgtaattgcttttgtctctgtgtccccgtaattgaatttcactttttccccctttcaaaaagacccgtcatcatcgcacttaatccgtttgttccccatgcgaatcaactcgtttctgtgccacaaaaagttgcactcacaaaaaaaatgtataaaactgcactcaaaagaggtgttaacttggacaatttaatcttttcaactactcatattgaattaggtgccataattctgtactaccctaactagtatttatttaactctgttactacttgagttcccagtcgagacaagccatttgagtgcctaatttattcaaatatgttttatataattgcagttggtccgtccttcgcattgattggcctcttattagctggctgactatctggctgagtgcattgttcccaaattatgcaaatttaactgagaattatgtgcggaatcagatgcatgcataatttatacatatttttaagtaatttcttgggcaaatgctaaaggggtgcagctgtgtgcagttgtgctcggaaaattcatagccaaaagctaaaagtgagcacacaaatcgaatggggaaaacttggagctgtgatggggaaagccaaagggattgatgtaaaaagagagttgtataatcaaaggagcgcacacacacacagccgtaatctggctaaaggtagtccaaaatacctggctgagttttttgcgtgtactttttgccgggtaaaagtaaaagctgaaattttgttatttgaacttttgcttatgagcgccctcaggtagcttgttaaacattcttgggctgcctacatatacacaaacatatatggacgcgtgtgtatacggtgtgctttttttttttgagcaacgagaggaaaacttcaacttgaaacacgaacatttgcatatgataagcaaataagcagatgtatgcaaggtagctgggcaaagttttattagattcttgattcgtgaaaggaaaaagagcaaatcggggttgatggcacgggtagcgcgcttttgcggcttcttctggccaacggatatgccatgaatatgcgtcccgaaaacctttggaaatatgcaaaacatttgaaaattatttttgcataaataacattgatgtaggctcacgtgtgtgcggcagccaaagggttgcaaatgagctcaaacatctgagcattaggtccaaagaggcttaccaactaccattgc
PCR verification status
Line verified as correct.