| ID | Coordinates* | Neighboring genes | Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16) |
Strongest annotations | Order |
|---|---|---|---|---|---|
| VT47167 | chr3R 20997630–20999927 (2297 bp) | lobo, dan |
      active |
apically cleared, dorsal ectoderm AISN subset, procephalic ectoderm AISN | VDRC |
Annotations
| stage | annotation term | intensity |
|---|---|---|
| 4-6 | dorsal ectoderm AISN subset | 4 |
| 4-6 | procephalic ectoderm AISN | 4 |
| 4-6 | trunk mesoderm AISN broad | 4 |
| 4-6 | head mesoderm AISN | 4 |
| 4-6 | ventral ectoderm AISN | 4 |
| 4-6 | apically cleared | 5 |
| 7-8 | ventral ectoderm anlage | 4 |
| 7-8 | ubiquitous | 3 |
| 7-8 | posterior endoderm anlage | 4 |
| 7-8 | dorsal ectoderm anlage broad | 3 |
| 7-8 | trunk mesoderm anlage broad | 4 |
| 9-10 | ventral ectoderm anlage | 4 |
| 9-10 | hindgut anlage | 4 |
| 11-12 | brain primordium subset | 3 |
| 11-12 | hindgut proper primordium | 3 |
| 13-14 | brain subset | 1 |
| 15-16 | not active | 0 |
Whole-slide images
Neighboring genes
| gene ID | gene name | distance | links |
|---|---|---|---|
| FBgn0083946 | lobo | overlapping | BDGP FlyBase |
| FBgn0039286 | dan | 12475bp upstream | BDGP FlyBase iFly |
| FBgn0039288 | CG13653 | 23619bp upstream | BDGP FlyBase |
| FBgn0022800 | Cad96Ca | 25663bp upstream | BDGP FlyBase |
| FBgn0039290 | CG13654 | 27910bp upstream | BDGP FlyBase |
UCSC snapshot
Sequence
gcttcacttcctcgacctccacctcgacgattggatacgggtacggaacggccagctgatcgttgagaatcgtctcctcgcgggccactccggaaaccaccagcgctgggtgtccagctccaatcagcatgctgaccagcagagtggccatctcataggagttgcccttccgcttgcgcaacaaggtttccggcgaaatcaggcgatttggctaaaggattaaataagaaaataggatggtatgacaaatctttagactacaaaactggattatcaactaccttttgatcgattaaatgaacacttcatcggaaatgttctatctgagtacaagatacgttaatgttaaaaatatatttacatctgttacaaataactaccaaaggacttggctagcaaatgattgcgtctcattagcttaagaatgcaatatctctgaatcatcccccgataaaagtcattggaagccaatatgcaattgcaatacaagagtttattagctgcatataaatatgtagaggaatgtatatagaacggggctgaggaaacagcatgccagtttccacgaaatttggcacaaactattgcgcagcacgagacaaaaaggaaatcttcgattacctttagcaagcagcgtttacctgcccgaggaaaatttatatgtacccttatatatggccctgtaaaaacagcaggagtcaagatcgtataggctatattttacaaccttggaaaagttatatccgctttgcattgaggatgtgaagacctcatatttgggaaatgaacctgttgagcggtgtgaaaacataagggtatcttaaaattttaatgttactactgaaagtaaaacaaccttactattccaagaggccgtctatatgttaaaaagtatctcaaaattgttttatcttaatctgatagtcccatgtttttattttcgtattcctcatgcgaattcttaagaatcgtttaaaacccaccaggaaactgtaacttcttggatgttttctaaagggggtattaaccatatagtgtgtactcatgcccgttcatttcgatgtgttttttttcccccgattttcggatgtcattcagttgcccaaaacaatcagcggtctgttttcattgcagctcggcatcgaggtagtgagacccactcccatttaatccgccttcggccgatcctttgtcccgattgttgtttacctgcacatctgcgactgccccgtaggtggctgcgtgaccccgtgccattcatcttctttgctgttccgcgaagacttaggagacaatcccgccgttgccaggaattctgtgcatgtgcgtccgaatctgtgaagcgtagcgaagcggccattaacgcgggaaacgctggcaattattgtgggcctggggttccgggttcctactgccacaccagtcgttgacacatacgcactccgagattgcaattgccattgcagcgtcggctgcgttgcagtcgggcaattcaaatacgcacagctctagtttcggctttgggataggatttaccggtataagccaagatctttcaggaggatctgtgactaggtatgcatgtgatggtagcatgttgatatgatatgaaattggtatatatggtaagatagtaatagtatctgaaagatatcacatgcagttcatggcatgtttccctaaaaccacattggctagccaacactttttcgcgggaaagttccgtgcaacccaggagctaaacaggattctagtcgtgtggtgggtcctgcacctttccaccctgcgcagatacgccccgtcgcttcgaagaaggccattaaaatgcaaaatcgccgtgtgaagccataagaatcacaatgaggcccggagtcatcagctatcagcggggcgaaccgaacgaagtcgcactgttcgaggtcaaacactctcgctcacgctctttcgaatcgattagtcagcaaaccagtcagtcagcggcgtctaattgaattcgatgcaaacggcattacctggccagccgattgagtcctcctcctcttcgtccagggttctcctgccctctacacggttcttcttccccagattccccggccaccaaggctaccctggactgcctggccatggaagcgcgttgcagagccgctatcactgcggtcgcgcgtaataagaaacgcttcaaggttattcgaacgtgttaaattaggatcgggcctggtagagcagtcgcaacaatggaggagcgaacatgacgaaaacaaagggacgaatgcacagcgagaatggagcaacgggcgc
PCR verification status
Line verified as correct.