| ID | Coordinates* | Neighboring genes | Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16) |
Strongest annotations | Order |
|---|---|---|---|---|---|
| VT47408 | chr3R 21457870–21460045 (2175 bp) | Ssadh, jigr1 |
      active |
procephalic ectoderm AISN, anterior endoderm AISN, procephalic ectoderm anlage | VDRC |
Annotations
| stage | annotation term | intensity |
|---|---|---|
| 4-6 | procephalic ectoderm AISN | 5 |
| 4-6 | anterior endoderm AISN | 4 |
| 4-6 | A-P semi-stripes dorsal | 3 |
| 4-6 | ventral ectoderm AISN | 3 |
| 7-8 | procephalic ectoderm anlage | 4 |
| 7-8 | anterior endoderm anlage | 3 |
| 7-8 | ventral epidermis anlage | 2 |
| 9-10 | head subset | 4 |
| 9-10 | brain anlage broad | 4 |
| 9-10 | mesectoderm anlage | 3 |
| 11-12 | ventral midline | 3 |
| 11-12 | brain primordium broad | 4 |
| 13-14 | brain subset | 3 |
| 15-16 | brain subset | 2 |
Neighboring genes
| gene ID | gene name | distance | links |
|---|---|---|---|
| FBgn0039349 | Ssadh | 5225bp downstream | BDGP FlyBase |
| FBgn0039350 | jigr1 | 5695bp upstream | BDGP FlyBase |
| FBgn0039348 | Npl4 | 7487bp downstream | BDGP FlyBase |
| FBgn0039347 | CG5071 | 11470bp downstream | BDGP FlyBase |
| FBgn0262411 | mir-92a | 14358bp upstream | BDGP FlyBase |
UCSC snapshot
Sequence
cgcttgatttgctttcaagtcgctgcaaatacgatttctgttacatttttgtcgagtttaagttggcatttgtttgtattgaacaaacagaggtgatcgcactgcaaacaaataaatcagcactcgtaaaacaacggcgatcattggagttcagtggaagattgggtgagatcttctctgcgagatggggttagcttcacctccaggcgtaggtgaagttcattgacgcctcagttgggctacttaatctccattgctaacagaatctgtatgtgaaactagtcactcagattttttatacttaaaagacgttttatcatcatctggcttatttgttgtaatccttttaataacgtatgtttagtggccttgctaataaatcccgctattaagtcaatgttcccgctgatctggcggcttatcccccagctgagaatgcaaatccatcaagattgaatgctcgagtgcctcactactggaagattgtgcgcttagatcgctttgcagccatatgtgtgataatgccaaatttgcacaccatcgatcggatggatgggccagttgcccgaggagggttattcgcgctaacaacttcattgcggaccacggacaagattgcaaattgcgagagatcgatcaaaaatactttcaccttggctcaaatgagtcgtgaaattcggtcttgcgcaagaatcctgcaaatgcaatttgccacagaggggttccaatgtatcgagatgatccatccgttttagtgctgctgcctattgtcctttttttgggcctaagccgcaagcaaatttgtttgccgctcgagatcgatcatttttgggatcgtaaatcacggcaggatgtgcaggaccagtgtccttttgtctttgccctgccattgtgctcgaaatgttgtttttctttcggcttttatttctgctttcctctactgtttgcatttcgaaatgcaaaatatgagcaaaaagggaaaggaggctgagacgaagaaatgctgaccgatcttttggcgatatgcaaacatctgccattggccctgtttacttgcctttcgaccactccgcaccgctgaacacaactgtaccgaggatttggtagagatcttcgttcgcacttattcctcatcaattagctacgtgatctaccaggaatcggtgtaaggatcatagtggaaccaatcactccacacctgttatttaggacactattagctacgtgagcgcgcctcgcgatcttcactcaagaaaactcaagaccacgtaggatcaaacgtatgcatgcatttctaccagcagagcagcccgaaaaggcttaggccaaacctgttggtccgcctaatgccgcacattaattcaataggccacgaaggaggatcgtgggttcgttcatgcatgtagatcaccgcagcggatcaaaataaagatcgaaatgcagactgaaagcctgaagtttgaaaacagtcgggtaaagaggaccaaaacaggtacaggtagttcaaatcctctgtctgcggctcgtctacaggattagcgttagaaaaaggatcgatgaatgcgccaaggatctggccgccgatcgccaagtgaagaggaatcccttacaggctcggtccattccaatccattcgggcggaagtaacagctgctgccgctgattcttgggtcctgatcaccatcttttcggtccatgtaagatgggttggcaattatcgatgctgcagctgtaaaaatgccgaaaaacaacagacccataaagacggaatcaatgcgaaagcttcgctcccacacaaaaagcttcctgcggctacgatcgttccggtgcactgccacaaaaagtcgagcatcttgaaagtattctttgttctcaaagtactaaatagcaacaatttatgattcttcccctttttttaagtacgacaagacgtatagcttataatgaatgcagttttggaaattgtataatatcttcttgcagtgtggaagactctcttctggcccaaagatgcatctctgtgtttgagcctgttcttcttcttcgacggctgtcgttgtcgcacctgtcgcacaatttatttttcgcccaagatacaaaaaagcccaaaaagcaatgcaataaccaccgaaaaaatacgaaataaaaaaaaaactgggcagcaaaaagcagttgc
PCR verification status
Line verified as correct.