| ID | Coordinates* | Neighboring genes | Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16) |
Strongest annotations | Order |
|---|---|---|---|---|---|
| VT57339 | chrX 5457902–5459987 (2085 bp) | Vsx2, Vsx1 |
      active |
epipharynx primordium, head subset, epipharynx | VDRC |
Annotations
| stage | annotation term | intensity |
|---|---|---|
| 4-6 | posterior endoderm AISN | 1 |
| 4-6 | anterior endoderm AISN | 1 |
| 7-8 | anterior endoderm anlage | 3 |
| 9-10 | clypeolabrum anlage | 3 |
| 11-12 | head subset | 3 |
| 11-12 | epipharynx primordium | 4 |
| 11-12 | ventral nerve cord primordium subset | 3 |
| 13-14 | head subset | 4 |
| 13-14 | ventral nerve cord subset | 3 |
| 13-14 | epipharynx | 4 |
| 13-14 | brain subset | 3 |
| 13-14 | dorsal epidermis subset | 1 |
| 15-16 | head subset | 2 |
| 15-16 | ventral nerve cord subset | 2 |
| 15-16 | brain subset | 3 |
| 15-16 | dorsal epidermis subset | 2 |
Neighboring genes
| gene ID | gene name | distance | links |
|---|---|---|---|
| FBgn0263512 | Vsx2 | 3687bp downstream | BDGP FlyBase |
| FBgn0263511 | Vsx1 | 30386bp upstream | BDGP FlyBase |
| FBgn0086667 | snoRNA:Psi28S-3342 | 39405bp downstream | BDGP FlyBase |
| FBgn0029771 | CG12730 | 45099bp downstream | BDGP FlyBase |
| FBgn0085464 | CG34435 | 49456bp upstream | BDGP FlyBase |
UCSC snapshot
Sequence
ccgcccagcaaaaagtaacagacgaactgaagttgaaaatactcgatcatcatttgtgtgaacgacgggaaaaatgatttatcattcgagggcactcgagagtgaggatgctcgctgacaggcgctagttcttcgactgggctgggttgctttcggcttaagttctttgggtacactaagaaaaacggcaagacctcgttctgtgtttccaacaaatatgctacaaaattgtcacattttatctaaatcgattttgttaactcgaaagctgtaagcggtccttgctagacacttacgctgacccctacgaatcatttctttcagtttacctccctatatctgacccctacgaatcatttctttcagtgtacctccctatatctggctgtgcgagctaccgaagtggccgaagtgtgtgctcgacaatgacgacgaaccaatttatgggacaggccttcgagttggcacttgagtaaaccgaaaggcaaacactgcacactaccacacaacccaacgtaaacggaatgattggcgagaggggtagcggtgtgattaggggtggtggcaactctgtccatcgacggtggttgtagcctcaaattggaaaataggcaacaacgaaatacgcgcagggccaaaacaaattagtagctgtacaaaaagaaaaaaaaaaaccaacaataataataacgaaaataagggagcgaggggtgtgaaatgcgaaaaccaaaatggccgaacttcaattgaagtgtaacatgaagaagtggctggccgctgagtttacagtacgcgtacccccgatggccgacacactgagagaaaagcagtggagtgtattgaaattcaagcgcattctgtgcaaacatcaatcagatattagtataaggaatcatgttttagagaaaataagttagtatggtttggttagattcaaacccataaaatcaagcataaaattcgcattgttcaaaaaacatttaacatctatgtgggattgaaataaggacgaaaaaataatgtaaattgcctcagtgtagatcgctgtcgacgggtcgctaatgatgatggaaggtcccgcgtctcgtttatgggttaatcaaattgtatgagcgggacttcagcatttcggctatgcaaaacagccgccggggcaaagggagtgttaaatgggagtggactgggttgtggatatggaagtgggatgtggaagtgggaatgacttcaattagacgcctggtttttgatgttctcgatggtggcggtacttggcagccaaccaaaaggggcgcaattcgcctgcaaatgggtgtacaacacggtgttataatgaaaacgagagaaaaaaaaagttcagagcacacaaaacatggcagcttgctgggcgcaaaaaaaaaaaaacgaaacggaaaaaaggggaaggcagccactttcaattgtggcaaattgcaggcgtttccgctgctgccatcattacttattattcgagctctgccctcactctgaatactttgcgctggcattttatttgttaattcttaaataagagtcgcgtgcaaatttgattatttcgccttcaagctgtgacccatggagttttggcaagagttgccattgcttttttatttttctgtaacttttttttttctttttcgttttttattttttttatttgtgaaaattcttttgttagaagttgtcgctggtggctgctaatgagccattgaaatcgcgatttgcatacgaaattgaatgcaagtaatgaaatattccggatttgaagtaagagagaaaatggcaacttcaagtgtccagtaatggatgtatttacaaattatctatatgtaaacgaataaaaatccaaatgtttcaatggaagggattgcgaagtacggtaaggaatcttttcatctttgaattgaaatgagtaattaaaccaaaatgtgaatttgttcttgaatttgaatttatttccctttcctaccaactggcgttaagacaaaaagcaaatcagttggcaattgacagaaacgagcgcaatgaaaacaaaaaccaaaaatccaatgcgtttgattgtttgtgcaga
PCR verification status
Line verified as correct.