| ID | Coordinates* | Neighboring genes | Expression (4–6, 7–8, 9–10, 11–12, 13–14, 15–16) |
Strongest annotations | Order |
|---|---|---|---|---|---|
| VT6462 | chr2L 12638405–12640505 (2100 bp) | Ref2, nub |
      active |
hypopharynx primordium, hypopharynx anlage, ventral epidermis primordium subset | VDRC |
Annotations
| stage | annotation term | intensity |
|---|---|---|
| 4-6 | not active | 0 |
| 7-8 | not active | 0 |
| 9-10 | hypopharynx anlage | 3 |
| 11-12 | ventral epidermis primordium subset | 2 |
| 11-12 | ventral nerve cord primordium subset | 2 |
| 11-12 | hypopharynx primordium | 4 |
| 13-14 | lateral epidermis subset | 2 |
| 13-14 | ventral nerve cord subset | 2 |
| 13-14 | brain subset | 2 |
| 13-14 | hypopharynx | 2 |
| 15-16 | head subset | 2 |
| 15-16 | lateral epidermis subset | 2 |
Neighboring genes
| gene ID | gene name | distance | links |
|---|---|---|---|
| FBgn0032439 | Ref2 | overlapping | BDGP FlyBase |
| FBgn0085424 | nub | 10271bp downstream | BDGP FlyBase iFly |
| FBgn0004394 | pdm2 | 18760bp upstream | BDGP FlyBase iFly |
| FBgn0032442 | CG15485 | 28843bp upstream | BDGP FlyBase |
| FBgn0032444 | CG5525 | 51931bp upstream | BDGP FlyBase |
UCSC snapshot
Sequence
ttttcggaccaatccccgaaggaacttgttccttctttatttatttccgaaaatgcaaatcatttcccttactccccaaacgattcctattatgcgctattaaatggtcaattgaattctgagtttcagcatttgaatgtctgcttttgaataaacaaatttctatttgattaatagcacgtatgaaaaaagaggagggaaattatttgattgtcatggtgaaatgtatattttttttgtttggtaaacgtcgaagttaactatctgtgtctaacgagattcacaactggttgactttcttcttttcatttgaatatgaaccacatttaattatacacaattgcatgtaagtaggtctaattactagtcttacctaatttgaatatatgtacatgcttcgaaaggtttgtaatgagatgctcattagcgagagcttcaaaaaaattgtagaaattgggttaatgtttatcgttagttgtatgttagatacttacaatcaatttagccaaattcgatctaaagcaagttttaacttaagcaaacatttgttgtgtatttatagtctttttttttcaacctaaaatagaacccatattttttataattatttgccctttcaacggtcaataaactgtataagccggcggtcctttagttgcccatgtcactcaatcatcaatatcgaacacacccatatgatgacacatatcacctacgagttacacaacctatgcattcctacccacatatttacttagcaaattaactaaaaagcaaatggaataaacgagttctgtgctcgtggagtgggagatctgaaattgaaattcaatatgatgagcgaagcaaatacgattcgaatacaaataaattggaatgcgataaacgttgcaatcaaaggtagagaactgaagaaaaccacaccccaggcgacccatagccactattttattttttttttaccagcaggtcctggccatgcgatactttgtgacaattaatacgctaaacgatggatgaaatgccggcaaggacgacagttctcaccggactgcctgggatatagttaaaaatgtgaggtgatcgggggaaatgaagcacgcctagcaggctgaaaattgccgcaggacacgcgtcgcgctcgtttgcgcaactaaactgaaattagttggtaaatgatgcgactccaccctctgataaaaaacagataaaaaatgaaacctaacgctggcccaaagagaaagcaggcgaaggtaagggggttggacgaaagtaaccgcacgacgaccacaagaacgcatcgataatgactgtaataaggattcaatgattgtcgtggattttgttttattctatttttttttttttttttttttttttgttaccaatctacgccacccctttttattccgctttttgatagggcgccctgccagggttactttcaatccgaaaccaaatcgcgttagcttgatggacattgtcatccccgatcgcattttgcatgaaagtttcgcgttgatgaggaaatttgtcaagaattggtcctccctaatgggaacattgcgtttttagcgtgctcaaaatgcaaatcactacttcccattttttatggacactcatagttatttttatgtgaaatttattctatgggaaaattgcaataaatttatgcgaagaaacaatatttattgaagttagtaataagttatctgcaaaatcaatattaattaattttcatgttcccatgttgacgtcgcttatcagcctgcgcataatatgataattattgcattttaaatgcaatttatgtaattatttgtctttcattaagttcaacaaacattacaagataaacagcacggccagcgtgcggcaaacaagcgaccaaggaccaaactggaatccaaccgacgacaatccgccagatacgcgtcattagaagccatcgcaagagcagaggtaaaattgcatatcgaacgctcgaaacgcataaattaagatccgaccagtccccagttgggcaaaaagtggccaaccgaacagaatgcagataccagatacaggaaccaactgctgctgtccatcgctcactggatgt
PCR verification status
Line verified as correct.